I’m still trying to put my own thoughts into words over this issue, and they are not coming easily. In the meantime, here’s someone else’s point of view on the matter.
Back in 2009, I put together a quick list of pagan run or pagan-friendly charities and scholarships.
I’m certain that some of those links are by now out of date, and there may be new ones that should be included. Can you help by commenting here with any that you know?
Some of those are probably duplicated here:
http://www.angelfire.com/ia/Geoff/pagan.html (about 1/3 of the page down, some may have been discontinued)
My personal favorite pagan charity: Act of Kindness
There are others, this is just a few off google…but it seems that a lot of folk do not know about them.